Index: gliderproc/trunk/gliderEcopuck_Generate_L1_Data.m
===================================================================
--- gliderproc/trunk/gliderEcopuck_Generate_L1_Data.m (revision 512)
+++ gliderproc/trunk/gliderEcopuck_Generate_L1_Data.m (revision 513)
@@ -62,4 +62,10 @@
         cdom = [];
         scatter = [];
+        chlor_sig = [];
+        cdom_sig = [];
+        scatter_sig = [];
+        chlor_ref = [];
+        cdom_ref = [];
+        scatter_ref = [];
         ptime_ebd = [];
         
@@ -67,11 +73,23 @@
         switch gliderIndex
             case 1 % Pelagia
-                chlor_name     = 'sci_bbfl2s_chlor_scaled';
-                cdom_name      = 'sci_bbfl2s_cdom_scaled';
-                scatter_name   = 'sci_bbfl2s_bb_scaled';
+                chlor_name       = 'sci_bbfl2s_chlor_scaled';
+                cdom_name        = 'sci_bbfl2s_cdom_scaled';
+                scatter_name     = 'sci_bbfl2s_bb_scaled';
+                chlor_sig_name   = 'sci_bbfl2s_chlor_sig';
+                cdom_sig_name    = 'sci_bbfl2s_cdom_sig';
+                scatter_sig_name = 'sci_bbfl2s_bb_sig';
+                chlor_ref_name   = 'sci_bbfl2s_chlor_ref';
+                cdom_ref_name    = 'sci_bbfl2s_cdom_ref';
+                scatter_ref_name = 'sci_bbfl2s_bb_ref';
             case 2 % Ramses
-                chlor_name     = 'sci_flbbcd_chlor_units';
-                cdom_name      = 'sci_flbbcd_cdom_units';
-                scatter_name   = 'sci_flbbcd_bb_units';
+                chlor_name       = 'sci_flbbcd_chlor_units';
+                cdom_name        = 'sci_flbbcd_cdom_units';
+                scatter_name     = 'sci_flbbcd_bb_units';
+                chlor_sig_name   = 'sci_flbbcd_chlor_sig';
+                cdom_sig_name    = 'sci_flbbcd_cdom_sig';
+                scatter_sig_name = 'sci_flbbcd_bb_sig';
+                chlor_ref_name   = 'sci_flbbcd_chlor_ref';
+                cdom_ref_name    = 'sci_flbbcd_cdom_ref';
+                scatter_ref_name = 'sci_flbbcd_bb_ref';
         end
 
@@ -106,4 +124,22 @@
                         data.data(:,strmatch(scatter_name,...
                                              data.vars, 'exact'))];
+                    chlor_sig = [chlor_sig; ...
+                        data.data(:,strmatch(chlor_sig_name,...
+                                             data.vars, 'exact'))];
+                    cdom_sig = [cdom_sig; ...
+                        data.data(:,strmatch(cdom_sig_name,...
+                                             data.vars, 'exact'))];
+                    scatter_sig = [scatter_sig; ...
+                        data.data(:,strmatch(scatter_sig_name,...
+                                             data.vars, 'exact'))];
+                    chlor_ref = [chlor_ref; ...
+                        data.data(:,strmatch(chlor_ref_name,...
+                                             data.vars, 'exact'))];
+                    cdom_ref = [cdom_ref; ...
+                        data.data(:,strmatch(cdom_ref_name,...
+                                             data.vars, 'exact'))];
+                    scatter_ref = [scatter_ref; ...
+                        data.data(:,strmatch(scatter_ref_name,...
+                                             data.vars, 'exact'))];
                     ptime_ebd = [ptime_ebd; ...
                         data.data(:,strmatch('sci_m_present_time',...
@@ -121,4 +157,10 @@
         cdom = cdom(i);
         scatter = scatter(i);
+        chlor_sig = chlor_sig(i);
+        cdom_sig = cdom_sig(i);
+        scatter_sig = scatter_sig(i);
+        chlor_ref = chlor_ref(i);
+        cdom_ref = cdom_ref(i);
+        scatter_ref = scatter_ref(i);
         ptime_ebd = ptime_ebd(i);
         
@@ -130,4 +172,10 @@
         cdom = cdom(I);
         scatter = scatter(I);
+        chlor_sig = chlor_sig(I);
+        cdom_sig = cdom_sig(I);
+        scatter_sig = scatter_sig(I);
+        chlor_ref = chlor_ref(I);
+        cdom_ref = cdom_ref(I);
+        scatter_ref = scatter_ref(I);
 
         % convert ptime into datenum style...
@@ -139,4 +187,10 @@
             'cdom', 'ppb', ...
             'scatter', '1/mm', ...
+            'chlor_sig', 'count', ...
+            'cdom_sig', 'count', ...
+            'scatter_sig', 'count', ...
+            'chlor_ref', 'count', ...
+            'cdom_ref', 'count', ...
+            'scatter_ref', 'count', ...
             'ptime_ebd', 'seconds since 0000-01-01T00:00', ...
             'ptime_ebd_datenum', 'days since 1970-01-01T00:00');
@@ -146,4 +200,10 @@
             'cdom', 'chromophoric dissolved organic matter', ...
             'scatter', 'backscatter', ...
+            'chlor_sig', 'chlorophyll raw count', ...
+            'cdom_sig', 'chromophoric dissolved organic matter raw count', ...
+            'scatter_sig', 'backscatter raw count', ...
+            'chlor_ref', 'chlorophyll reference count', ...
+            'cdom_ref', 'chromophoric dissolved organic matter reference count', ...
+            'scatter_ref', 'backscatter reference count', ...
             'ptime_ebd', 'science computer time', ...
             'ptime_ebd_datenum', 'science computer date');
@@ -165,4 +225,10 @@
              'cdom', ...
              'scatter', ...
+             'chlor_sig', ...
+             'cdom_sig', ...
+             'scatter_sig', ...
+             'chlor_ref', ...
+             'cdom_ref', ...
+             'scatter_ref', ...
              'ptime_ebd', ...
              'ptime_ebd_datenum');