function [data,nnv,gname]=read_s3r(fname) %READ_S3R read a FEM output file of .s3r filetype. % READ_S3R is part of a suite of OPNML I/O functions % to read specific filetypes pertaining to FEM model % input and output. These functions allow the user to % get these data files into MATLAB without copying the % files and removing the header info by hand. % % READ_S3R reads the ascii filetypes .s3r, % as detailed in "Data File Standards for the Gulf of Maine % Project" from the Numerical Methods Laboratory at Dartmouth % College. (This document is located in the OPNML notebook % under External Documents.) There are three columns, the % first of which is the node number. The second and third % columns are floating point numbers. The filetype suffix % ('.s3r') must be included in the input file name. % % Input : If fname is omitted, READ_S3R enables a file browser % with which the user can specify the .s3r file. % % Otherwise, fname is the name of the file, relative or % absolute (fullpath), including the '.s3r' suffix; % This input is a string so it must be enclosed in % single quotes. The comment line is discarded. % % Output : Call READ_S3R as: % >> [data,nnv,gname]=read_s3r(fname); % The domain name will be returned in "gname". % The number of vertical nodes is returned in "nnv". % The node counter, depth and value of the scalar field % are returned in "data". % % If READ_S3R cannot locate the file, it exits, returning % a -1 instead of the data matrix. % % NOTES : The .s3r filetype contains 3-D data; i.e., real-valued % scalar data at each vertical node per horizontal node. % % Call as: [data,nnv,gname]=read_s3r(fname); % % Written by : Brian O. Blanton % if nargin==0 & nargout==0 disp('Call as: [data,nnv,gname]=read_s3r(fname);') return end if ~exist('fname') [fname,fpath]=uigetfile('*.s3r','Which .s3r ?'); if fname==0,return,end else fpath=[]; end % get filetype from tail of fname ftype=fname(length(fname)-2:length(fname)); % make sure this is an allowed filetype if ~strcmp(ftype,'s3r') error(['READ_S3R cannot read ' ftype ' filetype']) end % open fname [pfid,message]=fopen([fpath fname]); if pfid==-1 error([fpath fname,' not found. ',message]); end % In all filetypes there is always a gridname and description line % as lines #1 and #2 of the file. % read grid name from top of file; header line #1 gridname=fgets(pfid); gname=blank(gridname); % read description line from top of file; header line #2 descline=fgets(pfid); % read number of vertical nodes (line #3) nnv=fscanf(pfid,'%d',1); % read data segment data=fscanf(pfid,'%d %f %f',[3 inf])'; fclose(pfid); % % Brian O. Blanton % Department of Marine Sciences % 15-1A Venable Hall % CB# 3300 % Uni. of North Carolina % Chapel Hill, NC % 27599-3300 % % 919-962-4466 % blanton@marine.unc.edu %